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Dev->main for v1.0.1#32

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shousner merged 3 commits intomainfrom
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May 1, 2026
Merged

Dev->main for v1.0.1#32
shousner merged 3 commits intomainfrom
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@shousner shousner commented May 1, 2026

Purpose

Minor patch fix to go to v1.0.1 to allow all files and functions to work when pip installing. There was a missing "*" in pyproject.toml that prevented files from fad subfolders from being installed.

This PR also includes updates to the plotting and visualization including new geography functions for species data and seabed slopes.

Type of change

  • Bugfix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Code style update (formatting, renaming)

shousner added 3 commits May 1, 2026 15:12
- After pip installing, only the main fad folder was being installed and not everything else in the other subfolders. This fix in pyproject.toml should do the trick.
geography updates
- new geography function to load in species data from a specific csv file format
- - stores the polished species data in a dataframe
- better way to write out the formatting of a soil file
- geopandas has two functions, unary_union and union_all, that work better or worse for different versions
plot2d updates
- more detailed and organized docstrings
- ability to plot seabed slope (based all on bathymetry data)
- ability to plot species data
- - plots circles with radius and transparency as a function of the date of record and location accuracy
- - creates a separate figure for the legend
- new inputs for x and y lim if necessary, or automatic zoom to boundary with a default buffer
- the main legend is now plotted with the number of columns in the legend based on the figure width
- - I was getting too many legend entries cut off, so hopefully this solves this
plot3d
- new updates to depth_vmin and _vmax in 3d, similar implementation as plot2d
project
- simple setter function to load in species data (and to stay consistent with other seabed loading functions)
- functions to calculate the slope of the seabed based on bathymetry

- LinearSystem quick helper input for the rounding condition in null_space
- required entering in the repo location on PyPI itself
@shousner shousner merged commit 1e54c39 into main May 1, 2026
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